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knowledge-base/README.md
2026-03-08 21:52:12 -04:00

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# Knowledge Base RAG System
A self-hosted RAG (Retrieval Augmented Generation) system for your Obsidian vault with MCP server integration.
## Features
- **Semantic Search**: Find relevant content using embeddings, not just keywords
- **MCP Server**: Exposes search, indexing, and stats tools via MCP protocol
- **Local-first**: No external APIs - everything runs locally
- **Obsidian Compatible**: Works with your existing markdown vault
## Requirements
- Python 3.11+
- ~2GB disk space for embeddings model
## Quick Start
### 1. Install uv (if not already)
```bash
curl -LsSf https://astral.sh/uv/install.sh | sh
source ~/.local/bin/env
```
### 2. Clone and setup
```bash
cd ~/knowledge-base
cp .env.example .env
```
### 3. Configure
Edit `.env` to set your vault path:
```bash
VAULT_PATH=/path/to/your/obsidian-vault
EMBEDDING_MODEL=all-MiniLM-L6-v2 # optional
```
### 4. Install dependencies
```bash
uv sync
```
### 5. Run the server
```bash
source .venv/bin/activate
VAULT_PATH=./knowledge python -m knowledge_rag.server
```
The server will:
- Auto-index your vault on startup
- Listen for MCP requests via stdio
## MCP Tools
Once running, these tools are available:
| Tool | Description |
|------|-------------|
| `search_knowledge` | Semantic search across your vault |
| `index_knowledge` | Re-index the vault (use after adding files) |
| `get_knowledge_stats` | View indexing statistics |
## Usage Example
```python
# Example: Searching the knowledge base
# (via MCP client or Claude Desktop integration)
await search_knowledge({
"query": "how does the RAG system work",
"top_k": 5
})
```
## Project Structure
```
knowledge-base/
├── src/knowledge_rag/ # Source code
│ ├── server.py # MCP server
│ ├── chunker.py # Markdown chunking
│ ├── embeddings.py # Sentence-transformers wrapper
│ └── vector_store.py # ChromaDB wrapper
├── knowledge/ # Your Obsidian vault (gitignored)
├── pyproject.toml # Project config
└── .env.example # Environment template
```
## Configuration
| Variable | Default | Description |
|----------|---------|-------------|
| `VAULT_PATH` | `/data/vault` | Path to your Obsidian vault |
| `EMBEDDING_MODEL` | `all-MiniLM-L6-v2` | Sentence-transformers model |
| `EMBEDDINGS_CACHE_DIR` | `/data/embeddings_cache` | Model cache location |
## Troubleshooting
### First run is slow
The embedding model (~90MB) downloads on first run. Subsequent runs are faster.
### No search results
Run `index_knowledge` tool to index your vault, or restart the server.
### Out of memory
The default model is lightweight. For even smaller models, try `paraphrase-MiniLM-L3-v2`.
## License
MIT